GenomeRunner web

server, a module to run web interface

Before starting the web server, ensure you've created a database and have at least one background file.

Multiple databases support

As more genome annotation data become available, it's a good idea to use the latest version of the data without losing previous database snapshots. Simply re-run the dbcreator module specifying new database [dir] name according to the conventions. Multiple comma-separated database names can be supplied to the server module, allowing a user to select desired database version from a drop-down menu.

We start the web interface as:

python -m grsnp.server -g hg19 -d [dir1],[dir2],[dir3] -r [dir1]

where the -d argument accepts a single or comma-separated full paths to the databases.

The -r argument specifies path to the results folder.

Access GenomeRunner on http://localhost:8000/gr/.

The server module creates a log file (genomerunner_server.log) in the [dir] folder - study it for troubleshooting.