http://rmarkdown.rstudio.com/

• Default presentations in RStudio

https://support.rstudio.com/hc/en-us/sections/200130218-R-Presentations

• LaTeX-based document template for creating slides and presentations
• YAML setting: output: beamer_presentation
• YAML settings for theme, colortheme, fonttheme
• Markdown syntax can be mixed with LaTeX
• Presentation format: http://rmarkdown.rstudio.com/beamer_presentation_format.html
• Customizing Beamer slides: https://kbroman.wordpress.com/2013/10/07/better-looking-latexbeamer-slides

• Default format for RMarkdown presentations
• YAML setting: output: ioslides_presentation
• Markdown syntax can be mixed with HTML
• Presentation format: http://rmarkdown.rstudio.com/ioslides_presentation_format.html
• Example: https://github.com/mdozmorov/presentations/tree/master/reproducible_research/reproducible_research_2016-09-09

• Slidy: a HTML-based slideshow

  1. YAML setting: output: slidy_presentation
  2. Tutorial/example: https://www.w3.org/Talks/Tools/Slidy2/

• reveal.js: the HTML presentation framework, highly customizable

  1. YAML setting: output: revealjs::revealjs_presentation
  2. Example: http://lab.hakim.se/reveal-js/

• Customizable presentations in R Markdown. HTML-based. Can render presentations in any format.

• http://slidify.org/: 5 min video tutorial

• Example: Slidify: 'Reproducible HTML Slides from R Markdown', http://slidify.org/samples/intro/

• Themes: https://ramnathv.github.io/slidifyExamples/

• Distinctive style of text with sidenotes

• tufte package implements rendering tufte_handouts, tufte_book, tufte_html

• Installed as a template

• Presentation format: http://rmarkdown.rstudio.com/tufte_handout_format.html

https://www.wired.com/2003/09/ppt2/

• Shiny - a web application framework for R, http://shiny.rstudio.com/

• Presentation format, http://rmarkdown.rstudio.com/authoring_shiny.html

• Generally used for exploratory data analysis

• Authoring Books with R Markdown: https://github.com/rstudio/bookdown

• https://bookdown.org/: free books authored with bookdown

• Example: 'Bookdown: Authoring Books with R Markdown', https://bookdown.org/yihui/bookdown/

• A simple way to make a website using Markdown and git, http://rmarkdown.rstudio.com/rmarkdown_websites.html

• GitHub pages hosting, https://pages.github.com/ - quick start on one page

• Example: 'Easy websites with GitHub Pages', http://kbroman.org/simple_site/

• LaTeX Journal Article Templates for R Markdown, https://github.com/rstudio/rticles

open access peer-reviewed scientific mega journal, https://peerj.com/

• Free preprint submission. Judges scientific/methodological rigor. Does not judge the results (may be null), interest or impact

https://github.com/PeerJ/paper-now

• MathJax - formula rendering engine accepting LaTeX, MathML, or AsciiMath syntax.
• Inline formula - decorate with $..$
  • e.g. "... when $x < y$ we have ..."
  • becomes "… when \(x < y\) we have …"
• Self-standing equation - decorate with $$..$$
  • e.g. $$\sum_{i=0}^n i^2 = \frac{(n^2+n)(2n+1)}{6}$$
  • becomes \[\sum_{i=0}^n i^2 = \frac{(n^2+n)(2n+1)}{6}\]

https://en.wikibooks.org/wiki/LaTeX/Mathematics

http://meta.math.stackexchange.com/questions/5020/mathjax-basic-tutorial-and-quick-reference

• http://rpubs.com/: publishing R Markdown reports and presentation on the web
• Everything public
• Example: 'R Cookbook - Chapter 11 - Linear Regression and ANOVA', http://rpubs.com/escott8908/RC11